Export the curated KE-WP and KE-GO mapping database in bioinformatics-ready formats.
Key Event to WikiPathways mappings in GMT format. One row per KE-pathway pair.
Gene symbols from WikiPathways (HGNC). Directly loadable by clusterProfiler
enricher() and fgsea gmtPathways().
Key Event to GO Biological Process mappings in GMT format. Gene symbols from GO biological process annotations (HGNC). Directly loadable by clusterProfiler and fgsea.
One row per Key Event. Gene symbols unioned across all approved WikiPathways
mappings for each KE. Use with fgsea gmtPathways() or clusterProfiler
read.gmt() for KE-level enrichment testing.
One row per Key Event. Gene symbols unioned across all approved GO Biological Process mappings for each KE. Directly loadable by clusterProfiler and fgsea.
Full KE-WP provenance in RDF/Turtle format. Includes curator GitHub username, approval timestamp, confidence level, suggestion score, and UUID per mapping. Parseable by rdflib, Protege, and any Turtle-compatible tool.
Full KE-GO provenance in RDF/Turtle format. Same provenance fields as KE-WP Turtle.
go_bp_gene_annotations.json (pre-computed).
License: CC0.